Lewis - visualise injection site

injection_view.py

import numpy as np

from brainrender import Scene
from brainrender.actors import Points

scene = Scene()

mos = scene.add_brain_region("MOs", alpha=0.15)

# coordinate from brainglobe_segmentation
# May need to multiply coordinate by atlas resolution (e.g. 10/25/50)
coords = np.array([[3000, 1825, 8575]])

# Add to scene
scene.add(Points(coords, name="CELLS", colors="steelblue", radius=150))

# render
scene.content
scene.render()