Visualise barrels in brainrender

brainrender_barrel.py

from pathlib import Path

from myterial import *
from rich import print

from brainrender import Scene
from brainrender import settings
settings.SHOW_AXES = False


# Create a brainrender scene
scene = Scene(atlas_name="allen_mouse_bluebrain_barrels_10um", inset=False)

# Add brain regions
scene.add_brain_region("SSp-bfd-A1", color="red")
scene.add_brain_region("SSp-bfd-A2", color="red")
scene.add_brain_region("SSp-bfd-A3", color="red")
scene.add_brain_region("SSp-bfd-Alpha", color="red")

scene.add_brain_region("SSp-bfd-B1", color="indigo")
scene.add_brain_region("SSp-bfd-B2", color="indigo")
scene.add_brain_region("SSp-bfd-B3", color="indigo")
scene.add_brain_region("SSp-bfd-B4", color="indigo")
scene.add_brain_region("SSp-bfd-Beta", color="indigo")

scene.add_brain_region("SSp-bfd-C1", color="green")
scene.add_brain_region("SSp-bfd-C2", color="green")
scene.add_brain_region("SSp-bfd-C3", color="green")
scene.add_brain_region("SSp-bfd-C4", color="green")
scene.add_brain_region("SSp-bfd-C5", color="green")
scene.add_brain_region("SSp-bfd-C6", color="green")

scene.add_brain_region("SSp-bfd-D1", color="orange")
scene.add_brain_region("SSp-bfd-D2", color="orange")
scene.add_brain_region("SSp-bfd-D3", color="orange")
scene.add_brain_region("SSp-bfd-D4", color="orange")
scene.add_brain_region("SSp-bfd-D5", color="orange")
scene.add_brain_region("SSp-bfd-D6", color="orange")
scene.add_brain_region("SSp-bfd-D7", color="orange")
scene.add_brain_region("SSp-bfd-D8", color="orange")
scene.add_brain_region("SSp-bfd-Delta", color="orange")
#
scene.add_brain_region("SSp-bfd-E1", color="yellow")
scene.add_brain_region("SSp-bfd-E2", color="yellow")
scene.add_brain_region("SSp-bfd-E3", color="yellow")
scene.add_brain_region("SSp-bfd-E4", color="yellow")
scene.add_brain_region("SSp-bfd-E5", color="yellow")
scene.add_brain_region("SSp-bfd-E6", color="yellow")
scene.add_brain_region("SSp-bfd-E7", color="yellow")
scene.add_brain_region("SSp-bfd-E8", color="yellow")
# scene.add_brain_region("SSp-bfd-Gamma", color="black")

# Render!
scene.render()