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gaborcsardi/git.R

Last active April 25, 2023 22:06
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git protocol example from R
Raw
git.R
h <- curl::new_handle()
curl::handle_setheaders(
handle = h,
"User-Agent" = "git/2.38.1"
)
res1 <- curl::curl_fetch_memory(
handle = h,
"https://github.com/r-lib/pak.git/info/refs?service=git-upload-pack"
)
data <- charToRaw(paste0(sep = "",
"0012command=fetch\n",
"0015agent=git/2.38.1\n",
"0017object-format=sha1\n",
"0001",
"000ethin-pack\n",
"0010include-tag\n",
"000eofs-delta\n",
"000ddeepen 1\n",
"0032want 1f1d1e484a620d67de1358e8681e81ee29ea3453\n",
"0032want 1f1d1e484a620d67de1358e8681e81ee29ea3453\n",
"0009done\n",
"0000"
))
curl::handle_setopt(
h,
customrequest = "POST",
postfieldsize = length(data),
postfields = data,
verbose = TRUE
)
curl::handle_setheaders(
handle = h,
"Content-Type" = "application/x-git-upload-pack-request",
"User-Agent" = "git/2.38.1",
"accept-encoding" = "deflate, gzip",
"accept" = "application/x-git-upload-pack-result",
"git-protocol" = "version=2",
"content-length" = as.character(length(data))
)
result <- list()
res2 <- curl::curl_fetch_stream(
handle = h,
"https://github.com/r-lib/pak.git/git-upload-pack",
fun = function(data) {
print(length(data))
result[[length(result) + 1L]] <<- data
}
)
Raw
sparse checkout debug
❯ GIT_CURL_VERBOSE=1 GIT_TRACE=2 GIT_TRACE_PACKET=true git clone -n --filter=blob:none --depth 1 https://github.com/gaborcsardi/playground
18:06:34.636023 git.c:460 trace: built-in: git clone -n --filter=blob:none --depth 1 https://github.com/gaborcsardi/playground
Cloning into 'playground'...
18:06:34.648903 run-command.c:655 trace: run_command: git remote-https origin https://github.com/gaborcsardi/playground
18:06:34.656483 git.c:750 trace: exec: git-remote-https origin https://github.com/gaborcsardi/playground
18:06:34.656975 run-command.c:655 trace: run_command: git-remote-https origin https://github.com/gaborcsardi/playground
18:06:34.663636 http.c:678 == Info: Couldn't find host github.com in the (nil) file; using defaults
18:06:34.668390 http.c:678 == Info: Trying 140.82.121.3:443...
18:06:34.704130 http.c:678 == Info: Connected to github.com (140.82.121.3) port 443 (#0)
18:06:34.704400 http.c:678 == Info: ALPN, offering h2
18:06:34.704414 http.c:678 == Info: ALPN, offering http/1.1
18:06:34.714429 http.c:678 == Info: successfully set certificate verify locations:
18:06:34.714444 http.c:678 == Info: CAfile: /etc/ssl/cert.pem
18:06:34.714449 http.c:678 == Info: CApath: none
18:06:34.715005 http.c:678 == Info: (304) (OUT), TLS handshake, Client hello (1):
18:06:34.751225 http.c:678 == Info: (304) (IN), TLS handshake, Server hello (2):
18:06:34.751489 http.c:678 == Info: (304) (IN), TLS handshake, Unknown (8):
18:06:34.751527 http.c:678 == Info: (304) (IN), TLS handshake, Certificate (11):
18:06:34.755211 http.c:678 == Info: (304) (IN), TLS handshake, CERT verify (15):
18:06:34.755663 http.c:678 == Info: (304) (IN), TLS handshake, Finished (20):
18:06:34.755926 http.c:678 == Info: (304) (OUT), TLS handshake, Finished (20):
18:06:34.755949 http.c:678 == Info: SSL connection using TLSv1.3 / AEAD-CHACHA20-POLY1305-SHA256
18:06:34.755955 http.c:678 == Info: ALPN, server accepted to use h2
18:06:34.755963 http.c:678 == Info: Server certificate:
18:06:34.755980 http.c:678 == Info: subject: C=US; ST=California; L=San Francisco; O=GitHub, Inc.; CN=github.com
18:06:34.755988 http.c:678 == Info: start date: Mar 15 00:00:00 2022 GMT
18:06:34.755992 http.c:678 == Info: expire date: Mar 15 23:59:59 2023 GMT
18:06:34.756010 http.c:678 == Info: subjectAltName: host "github.com" matched cert's "github.com"
18:06:34.756021 http.c:678 == Info: issuer: C=US; O=DigiCert Inc; CN=DigiCert TLS Hybrid ECC SHA384 2020 CA1
18:06:34.756028 http.c:678 == Info: SSL certificate verify ok.
18:06:34.756063 http.c:678 == Info: Using HTTP2, server supports multiplexing
18:06:34.756068 http.c:678 == Info: Connection state changed (HTTP/2 confirmed)
18:06:34.756076 http.c:678 == Info: Copying HTTP/2 data in stream buffer to connection buffer after upgrade: len=0
18:06:34.756221 http.c:678 == Info: Using Stream ID: 1 (easy handle 0x15902a000)
18:06:34.756541 http.c:625 => Send header, 0000000235 bytes (0x000000eb)
18:06:34.756558 http.c:637 => Send header: GET /gaborcsardi/playground/info/refs?service=git-upload-pack HTTP/2
18:06:34.756561 http.c:637 => Send header: Host: github.com
18:06:34.756564 http.c:637 => Send header: user-agent: git/2.38.1
18:06:34.756568 http.c:637 => Send header: accept: */*
18:06:34.756571 http.c:637 => Send header: accept-encoding: deflate, gzip
18:06:34.756575 http.c:637 => Send header: accept-language: en-US, *;q=0.9
18:06:34.756579 http.c:637 => Send header: pragma: no-cache
18:06:34.756581 http.c:637 => Send header: git-protocol: version=2
18:06:34.756584 http.c:637 => Send header:
18:06:34.920848 http.c:625 <= Recv header, 0000000013 bytes (0x0000000d)
18:06:34.921066 http.c:637 <= Recv header: HTTP/2 200
18:06:34.921088 http.c:625 <= Recv header, 0000000026 bytes (0x0000001a)
18:06:34.921095 http.c:637 <= Recv header: server: GitHub Babel 2.0
18:06:34.921105 http.c:625 <= Recv header, 0000000059 bytes (0x0000003b)
18:06:34.921214 http.c:637 <= Recv header: content-type: application/x-git-upload-pack-advertisement
18:06:34.921266 http.c:625 <= Recv header, 0000000054 bytes (0x00000036)
18:06:34.921281 http.c:637 <= Recv header: content-security-policy: default-src 'none'; sandbox
18:06:34.921291 http.c:625 <= Recv header, 0000000040 bytes (0x00000028)
18:06:34.921298 http.c:637 <= Recv header: expires: Fri, 01 Jan 1980 00:00:00 GMT
18:06:34.921306 http.c:625 <= Recv header, 0000000018 bytes (0x00000012)
18:06:34.921312 http.c:637 <= Recv header: pragma: no-cache
18:06:34.921434 http.c:625 <= Recv header, 0000000053 bytes (0x00000035)
18:06:34.921445 http.c:637 <= Recv header: cache-control: no-cache, max-age=0, must-revalidate
18:06:34.921453 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:34.921459 http.c:637 <= Recv header: vary: Accept-Encoding
18:06:34.921466 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:34.921472 http.c:637 <= Recv header: x-frame-options: DENY
18:06:34.921479 http.c:625 <= Recv header, 0000000057 bytes (0x00000039)
18:06:34.921485 http.c:637 <= Recv header: x-github-request-id: CDE6:ADC6:F0A32A0:F78085F:6388DF1A
18:06:34.921495 http.c:625 <= Recv header, 0000000002 bytes (0x00000002)
18:06:34.921500 http.c:637 <= Recv header:
18:06:34.925787 http.c:678 == Info: Connection #0 to host github.com left intact
18:06:34.927387 pkt-line.c:80 packet: git< # service=git-upload-pack
18:06:34.927402 pkt-line.c:80 packet: git< 0000
18:06:34.927407 pkt-line.c:80 packet: git< version 2
18:06:34.927415 pkt-line.c:80 packet: git< agent=git/github-g5278a24c63ab
18:06:34.927419 pkt-line.c:80 packet: git< ls-refs=unborn
18:06:34.927423 pkt-line.c:80 packet: git< fetch=shallow wait-for-done filter
18:06:34.927427 pkt-line.c:80 packet: git< server-option
18:06:34.927430 pkt-line.c:80 packet: git< object-format=sha1
18:06:34.927434 pkt-line.c:80 packet: git< 0000
18:06:34.927714 pkt-line.c:80 packet: clone< version 2
18:06:34.927800 pkt-line.c:80 packet: clone< agent=git/github-g5278a24c63ab
18:06:34.927813 pkt-line.c:80 packet: clone< ls-refs=unborn
18:06:34.927818 pkt-line.c:80 packet: clone< fetch=shallow wait-for-done filter
18:06:34.927824 pkt-line.c:80 packet: clone< server-option
18:06:34.927830 pkt-line.c:80 packet: clone< object-format=sha1
18:06:34.927834 pkt-line.c:80 packet: clone< 0000
18:06:34.927844 pkt-line.c:80 packet: clone> command=ls-refs
18:06:34.927871 pkt-line.c:80 packet: clone> agent=git/2.38.1
18:06:34.927879 pkt-line.c:80 packet: clone> object-format=sha1
18:06:34.927883 pkt-line.c:80 packet: clone> 0001
18:06:34.927887 pkt-line.c:80 packet: clone> peel
18:06:34.927892 pkt-line.c:80 packet: clone> symrefs
18:06:18:06:34.928035 pkt-line.c:80 packet: git< command=ls-refs
18:06:34.928046 pkt-line.c:80 packet: git< agent=git/2.38.1
18:06:34.928051 pkt-line.c:80 packet: git< object-format=sha1
18:06:34.928055 pkt-line.c:80 packet: git< 0001
18:06:34.928060 pkt-line.c:80 packet: git< peel
18:06:34.928065 pkt-line.c:80 packet: git< symrefs
34.927897 pkt-line.c:80 packet: clone> unborn
18:06:34.928159 pkt-line.c:80 packet: clone> ref-prefix HEAD
18:06:34.928181 pkt-line.c:80 packet: clone> ref-prefix refs/heads/
18:06:34.928186 pkt-line.c:80 packet: clone> ref-prefix refs/tags/
18:06:34.928194 pkt-line.c:80 packet: clone> 0000
18:06:34.928293 pkt-line.c:80 packet: git< unborn
18:06:34.928358 pkt-line.c:80 packet: git< ref-prefix HEAD
18:06:34.928365 pkt-line.c:80 packet: git< ref-prefix refs/heads/
18:06:34.928371 pkt-line.c:80 packet: git< ref-prefix refs/tags/
18:06:34.928375 pkt-line.c:80 packet: git< 0000
18:06:34.928724 http.c:678 == Info: Couldn't find host github.com in the (nil) file; using defaults
18:06:34.928743 http.c:678 == Info: Found bundle for host github.com: 0x600000914000 [can multiplex]
18:06:34.928780 http.c:678 == Info: Re-using existing connection! (#0) with host github.com
18:06:34.928792 http.c:678 == Info: Connected to github.com (140.82.121.3) port 443 (#0)
18:06:34.928835 http.c:678 == Info: Using Stream ID: 3 (easy handle 0x15902a000)
18:06:34.929085 http.c:625 => Send header, 0000000307 bytes (0x00000133)
18:06:34.929107 http.c:637 => Send header: POST /gaborcsardi/playground/git-upload-pack HTTP/2
18:06:34.929112 http.c:637 => Send header: Host: github.com
18:06:34.929115 http.c:637 => Send header: user-agent: git/2.38.1
18:06:34.929118 http.c:637 => Send header: accept-encoding: deflate, gzip
18:06:34.929122 http.c:637 => Send header: content-type: application/x-git-upload-pack-request
18:06:34.929126 http.c:637 => Send header: accept: application/x-git-upload-pack-result
18:06:34.929129 http.c:637 => Send header: accept-language: en-US, *;q=0.9
18:06:34.929132 http.c:637 => Send header: git-protocol: version=2
18:06:34.929136 http.c:637 => Send header: content-length: 175
18:06:34.929139 http.c:637 => Send header:
18:06:34.929315 http.c:678 == Info: We are completely uploaded and fine
18:06:35.083059 http.c:625 <= Recv header, 0000000013 bytes (0x0000000d)
18:06:35.083155 http.c:637 <= Recv header: HTTP/2 200
18:06:35.083167 http.c:625 <= Recv header, 0000000026 bytes (0x0000001a)
18:06:35.083174 http.c:637 <= Recv header: server: GitHub Babel 2.0
18:06:35.083184 http.c:625 <= Recv header, 0000000052 bytes (0x00000034)
18:06:35.083192 http.c:637 <= Recv header: content-type: application/x-git-upload-pack-result
18:06:35.083200 http.c:625 <= Recv header, 0000000054 bytes (0x00000036)
18:06:35.083207 http.c:637 <= Recv header: content-security-policy: default-src 'none'; sandbox
18:06:35.083214 http.c:625 <= Recv header, 0000000040 bytes (0x00000028)
18:06:35.083223 http.c:637 <= Recv header: expires: Fri, 01 Jan 1980 00:00:00 GMT
18:06:35.083230 http.c:625 <= Recv header, 0000000018 bytes (0x00000012)
18:06:35.083236 http.c:637 <= Recv header: pragma: no-cache
18:06:35.083852 http.c:625 <= Recv header, 0000000053 bytes (0x00000035)
18:06:35.083861 http.c:637 <= Recv header: cache-control: no-cache, max-age=0, must-revalidate
18:06:35.083869 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:35.083875 http.c:637 <= Recv header: vary: Accept-Encoding
18:06:35.083881 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:35.083887 http.c:637 <= Recv header: x-frame-options: DENY
18:06:35.083894 http.c:625 <= Recv header, 0000000057 bytes (0x00000039)
18:06:35.083900 http.c:637 <= Recv header: x-github-request-id: CDE6:ADC6:F0A3369:F780923:6388DF1A
18:06:35.083910 http.c:625 <= Recv header, 0000000002 bytes (0x00000002)
18:06:35.083916 http.c:637 <= Recv header:
18:06:35.088483 http.c:678 == Info: Connection #0 to host github.com left intact
18:06:35.088548 pkt-line.c:80 packet: git> 0002
18:06:35.089090 pkt-line.c:80 packet: clone< fa522c149148b7bd8e55074fa2792735d621784c HEAD symref-target:refs/heads/main
18:06:35.089193 pkt-line.c:80 packet: clone< c03722f6a9ec6c31f0cac74969db3f2f2e9c747a refs/heads/gh-pages
18:06:35.089701 pkt-line.c:80 packet: clone< fa522c149148b7bd8e55074fa2792735d621784c refs/heads/main
18:06:35.089725 pkt-line.c:80 packet: clone< 0000
18:06:35.089767 pkt-line.c:80 packet: clone< 0002
18:06:35.103742 pkt-line.c:80 packet: clone> command=fetch
18:06:35.104230 pkt-line.c:80 packet: clone> agent=git/2.38.1
18:06:35.104242 pkt-line.c:80 packet: clone> object-format=sha1
18:06:35.104246 pkt-line.c:80 packet: clone> 0001
18:06:35.104250 pkt-line.c:80 packet: clone> thin-pack
18:06:35.104255 pkt-line.c:80 packet: clone> include-tag
18:06:35.104261 pkt-line.c:80 packet: clone> ofs-delta
18:06:35.104274 pkt-line.c:80 packet: clone> deepen 1
18:06:35.104288 pkt-line.c:80 packet: clone> filter blob:none
18:06:35.104294 pkt-line.c:80 packet: clone> want fa522c149148b7bd8e55074fa2792735d621784c
18:06:35.104299 pkt-line.c:80 packet: clone> want fa522c149148b7bd8e55074fa2792735d621784c
18:06:35.104304 pkt-line.c:80 packet: clone> done
18:06:35.104307 pkt-line.c:80 packet: clone> 0000
18:06:35.106052 pkt-line.c:80 packet: git< command=fetch
18:06:35.106075 pkt-line.c:80 packet: git< agent=git/2.38.1
18:06:35.106081 pkt-line.c:80 packet: git< object-format=sha1
18:06:35.106086 pkt-line.c:80 packet: git< 0001
18:06:35.106091 pkt-line.c:80 packet: git< thin-pack
18:06:35.106096 pkt-line.c:80 packet: git< include-tag
18:06:35.106101 pkt-line.c:80 packet: git< ofs-delta
18:06:35.106106 pkt-line.c:80 packet: git< deepen 1
18:06:35.106111 pkt-line.c:80 packet: git< filter blob:none
18:06:35.106116 pkt-line.c:80 packet: git< want fa522c149148b7bd8e55074fa2792735d621784c
18:06:35.106122 pkt-line.c:80 packet: git< want fa522c149148b7bd8e55074fa2792735d621784c
18:06:35.106127 pkt-line.c:80 packet: git< done
18:06:35.106131 pkt-line.c:80 packet: git< 0000
18:06:35.106719 http.c:678 == Info: Couldn't find host github.com in the (nil) file; using defaults
18:06:35.106741 http.c:678 == Info: Found bundle for host github.com: 0x600000914000 [can multiplex]
18:06:35.106786 http.c:678 == Info: Re-using existing connection! (#0) with host github.com
18:06:35.106800 http.c:678 == Info: Connected to github.com (140.82.121.3) port 443 (#0)
18:06:35.106847 http.c:678 == Info: Using Stream ID: 5 (easy handle 0x15902a000)
18:06:35.107240 http.c:625 => Send header, 0000000307 bytes (0x00000133)
18:06:35.107257 http.c:637 => Send header: POST /gaborcsardi/playground/git-upload-pack HTTP/2
18:06:35.107261 http.c:637 => Send header: Host: github.com
18:06:35.107264 http.c:637 => Send header: user-agent: git/2.38.1
18:06:35.107268 http.c:637 => Send header: accept-encoding: deflate, gzip
18:06:35.107271 http.c:637 => Send header: content-type: application/x-git-upload-pack-request
18:06:35.107275 http.c:637 => Send header: accept: application/x-git-upload-pack-result
18:06:35.107278 http.c:637 => Send header: accept-language: en-US, *;q=0.9
18:06:35.107282 http.c:637 => Send header: git-protocol: version=2
18:06:35.107286 http.c:637 => Send header: content-length: 249
18:06:35.107289 http.c:637 => Send header:
18:06:35.107350 http.c:678 == Info: We are completely uploaded and fine
18:06:35.274310 http.c:625 <= Recv header, 0000000013 bytes (0x0000000d)
18:06:35.274385 http.c:637 <= Recv header: HTTP/2 200
18:06:35.274398 http.c:625 <= Recv header, 0000000026 bytes (0x0000001a)
18:06:35.274406 http.c:637 <= Recv header: server: GitHub Babel 2.0
18:06:35.274415 http.c:625 <= Recv header, 0000000052 bytes (0x00000034)
18:06:35.274424 http.c:637 <= Recv header: content-type: application/x-git-upload-pack-result
18:06:35.274432 http.c:625 <= Recv header, 0000000054 bytes (0x00000036)
18:06:35.274439 http.c:637 <= Recv header: content-security-policy: default-src 'none'; sandbox
18:06:35.274448 http.c:625 <= Recv header, 0000000040 bytes (0x00000028)
18:06:35.274458 http.c:637 <= Recv header: expires: Fri, 01 Jan 1980 00:00:00 GMT
18:06:35.274465 http.c:625 <= Recv header, 0000000018 bytes (0x00000012)
18:06:35.274470 http.c:637 <= Recv header: pragma: no-cache
18:06:35.274587 http.c:625 <= Recv header, 0000000053 bytes (0x00000035)
18:06:35.274597 http.c:637 <= Recv header: cache-control: no-cache, max-age=0, must-revalidate
18:06:35.274605 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:35.274611 http.c:637 <= Recv header: vary: Accept-Encoding
18:06:35.274618 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:35.274624 http.c:637 <= Recv header: x-frame-options: DENY
18:06:35.274631 http.c:625 <= Recv header, 0000000057 bytes (0x00000039)
18:06:35.274637 http.c:637 <= Recv header: x-github-request-id: CDE6:ADC6:F0A3429:F7809F8:6388DF1A
18:06:35.274646 http.c:625 <= Recv header, 0000000002 bytes (0x00000002)
18:06:35.274652 http.c:637 <= Recv header:
18:06:35.277566 pkt-line.c:80 packet: clone< shallow-info
18:06:35.277618 pkt-line.c:80 packet: clone< shallow fa522c149148b7bd8e55074fa2792735d621784c
18:06:35.277637 pkt-line.c:80 packet: clone< 0001
18:06:35.278872 pkt-line.c:80 packet: clone< packfile
18:06:35.279180 run-command.c:655 trace: run_command: git --shallow-file /private/tmp/playground/.git/shallow.lock index-pack --stdin -v --fix-thin '--keep=fetch-pack 39609 on Gabors-MacBook-Pro-3.local' --promisor
18:06:35.286886 http.c:678 == Info: Connection #0 to host github.com left intact
18:06:35.286991 pkt-line.c:80 packet: git> 0002
18:06:35.290372 pkt-line.c:80 packet: sideband< \2Enumerating objects: 3, done.
remote: Enumerating objects: 3, done.
18:06:35.290580 pkt-line.c:80 packet: sideband< \2Counting objects: 33% (1/3)\15
18:06:35.290602 pkt-line.c:80 packet: sideband< \2Counting objects: 66% (2/3)\15Counting objects: 100% (3/3)\15
18:06:35.290620 pkt-line.c:80 packet: sideband< \2Counting objects: 100% (3/3), done.
remote: Counting objects: 100% (3/3), done.
18:06:35.290639 pkt-line.c:80 packet: sideband< \2Compressing objects: 50% (1/2)\15Compressing objects: 100% (2/2)\15
18:06:35.290664 pkt-line.c:80 packet: sideband< \2Compressing objects: 100% (2/2), done.
remote: Compressing objects: 100% (2/2), done.
18:06:35.290681 pkt-line.c:80 packet: sideband< PACK ...
18:06:35.290695 pkt-line.c:80 packet: sideband< \2Total 3 (delta 0), reused 3 (delta 0), pack-reused 0
remote: Total 3 (delta 0), reused 3 (delta 0), pack-reused 0
18:06:35.290711 pkt-line.c:80 packet: sideband< 0000
18:06:35.308098 git.c:460 trace: built-in: git index-pack --stdin -v --fix-thin '--keep=fetch-pack 39609 on Gabors-MacBook-Pro-3.local' --promisor
Receiving objects: 100% (3/3), done.
18:06:35.316150 pkt-line.c:80 packet: clone< 0002
/tmp
❯ cd playground
/tmp/playground main*
❯ ls
/tmp/playground main*
❯ GIT_CURL_VERBOSE=1 GIT_TRACE=2 GIT_TRACE_PACKET=true git checkout main -- dir/foo
18:06:58.621319 git.c:460 trace: built-in: git checkout main -- dir/foo
18:06:58.626463 run-command.c:655 trace: run_command: git -c fetch.negotiationAlgorithm=noop fetch origin --no-tags --no-write-fetch-head --recurse-submodules=no --filter=blob:none --stdin
18:06:58.636607 git.c:460 trace: built-in: git fetch origin --no-tags --no-write-fetch-head --recurse-submodules=no --filter=blob:none --stdin
18:06:58.637570 run-command.c:655 trace: run_command: GIT_DIR=.git git remote-https origin https://github.com/gaborcsardi/playground
18:06:58.644172 git.c:750 trace: exec: git-remote-https origin https://github.com/gaborcsardi/playground
18:06:58.645177 run-command.c:655 trace: run_command: git-remote-https origin https://github.com/gaborcsardi/playground
18:06:58.657732 http.c:678 == Info: Couldn't find host github.com in the (nil) file; using defaults
18:06:58.662515 http.c:678 == Info: Trying 140.82.121.3:443...
18:06:58.698531 http.c:678 == Info: Connected to github.com (140.82.121.3) port 443 (#0)
18:06:58.698766 http.c:678 == Info: ALPN, offering h2
18:06:58.698781 http.c:678 == Info: ALPN, offering http/1.1
18:06:58.709195 http.c:678 == Info: successfully set certificate verify locations:
18:06:58.709226 http.c:678 == Info: CAfile: /etc/ssl/cert.pem
18:06:58.709230 http.c:678 == Info: CApath: none
18:06:58.709649 http.c:678 == Info: (304) (OUT), TLS handshake, Client hello (1):
18:06:58.748598 http.c:678 == Info: (304) (IN), TLS handshake, Server hello (2):
18:06:58.749104 http.c:678 == Info: (304) (IN), TLS handshake, Unknown (8):
18:06:58.749177 http.c:678 == Info: (304) (IN), TLS handshake, Certificate (11):
18:06:58.755562 http.c:678 == Info: (304) (IN), TLS handshake, CERT verify (15):
18:06:58.756337 http.c:678 == Info: (304) (IN), TLS handshake, Finished (20):
18:06:58.756602 http.c:678 == Info: (304) (OUT), TLS handshake, Finished (20):
18:06:58.756635 http.c:678 == Info: SSL connection using TLSv1.3 / AEAD-CHACHA20-POLY1305-SHA256
18:06:58.756646 http.c:678 == Info: ALPN, server accepted to use h2
18:06:58.756657 http.c:678 == Info: Server certificate:
18:06:58.756681 http.c:678 == Info: subject: C=US; ST=California; L=San Francisco; O=GitHub, Inc.; CN=github.com
18:06:58.756694 http.c:678 == Info: start date: Mar 15 00:00:00 2022 GMT
18:06:58.756704 http.c:678 == Info: expire date: Mar 15 23:59:59 2023 GMT
18:06:58.756726 http.c:678 == Info: subjectAltName: host "github.com" matched cert's "github.com"
18:06:58.756749 http.c:678 == Info: issuer: C=US; O=DigiCert Inc; CN=DigiCert TLS Hybrid ECC SHA384 2020 CA1
18:06:58.756758 http.c:678 == Info: SSL certificate verify ok.
18:06:58.756790 http.c:678 == Info: Using HTTP2, server supports multiplexing
18:06:58.756799 http.c:678 == Info: Connection state changed (HTTP/2 confirmed)
18:06:58.756811 http.c:678 == Info: Copying HTTP/2 data in stream buffer to connection buffer after upgrade: len=0
18:06:58.757021 http.c:678 == Info: Using Stream ID: 1 (easy handle 0x133028e00)
18:06:58.757111 http.c:625 => Send header, 0000000235 bytes (0x000000eb)
18:06:58.757131 http.c:637 => Send header: GET /gaborcsardi/playground/info/refs?service=git-upload-pack HTTP/2
18:06:58.757139 http.c:637 => Send header: Host: github.com
18:06:58.757146 http.c:637 => Send header: user-agent: git/2.38.1
18:06:58.757151 http.c:637 => Send header: accept: */*
18:06:58.757158 http.c:637 => Send header: accept-encoding: deflate, gzip
18:06:58.757163 http.c:637 => Send header: accept-language: en-US, *;q=0.9
18:06:58.757169 http.c:637 => Send header: pragma: no-cache
18:06:58.757175 http.c:637 => Send header: git-protocol: version=2
18:06:58.757182 http.c:637 => Send header:
18:06:58.966627 http.c:625 <= Recv header, 0000000013 bytes (0x0000000d)
18:06:58.966708 http.c:637 <= Recv header: HTTP/2 200
18:06:58.966721 http.c:625 <= Recv header, 0000000026 bytes (0x0000001a)
18:06:58.966728 http.c:637 <= Recv header: server: GitHub Babel 2.0
18:06:58.966738 http.c:625 <= Recv header, 0000000059 bytes (0x0000003b)
18:06:58.966744 http.c:637 <= Recv header: content-type: application/x-git-upload-pack-advertisement
18:06:58.966753 http.c:625 <= Recv header, 0000000054 bytes (0x00000036)
18:06:58.966761 http.c:637 <= Recv header: content-security-policy: default-src 'none'; sandbox
18:06:58.966769 http.c:625 <= Recv header, 0000000040 bytes (0x00000028)
18:06:58.966776 http.c:637 <= Recv header: expires: Fri, 01 Jan 1980 00:00:00 GMT
18:06:58.966783 http.c:625 <= Recv header, 0000000018 bytes (0x00000012)
18:06:58.966789 http.c:637 <= Recv header: pragma: no-cache
18:06:58.967093 http.c:625 <= Recv header, 0000000053 bytes (0x00000035)
18:06:58.967103 http.c:637 <= Recv header: cache-control: no-cache, max-age=0, must-revalidate
18:06:58.967110 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:58.967116 http.c:637 <= Recv header: vary: Accept-Encoding
18:06:58.967123 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:58.967129 http.c:637 <= Recv header: x-frame-options: DENY
18:06:58.967136 http.c:625 <= Recv header, 0000000056 bytes (0x00000038)
18:06:58.967142 http.c:637 <= Recv header: x-github-request-id: CDEB:12B1F:47172C:49107F:6388DF32
18:06:58.967151 http.c:625 <= Recv header, 0000000002 bytes (0x00000002)
18:06:58.967157 http.c:637 <= Recv header:
18:06:58.967244 http.c:678 == Info: Connection #0 to host github.com left intact
18:06:58.969043 pkt-line.c:80 packet: git< # service=git-upload-pack
18:06:58.969062 pkt-line.c:80 packet: git< 0000
18:06:58.969070 pkt-line.c:80 packet: git< version 2
18:06:58.969080 pkt-line.c:80 packet: git< agent=git/github-g5278a24c63ab
18:06:58.969087 pkt-line.c:80 packet: git< ls-refs=unborn
18:06:58.969094 pkt-line.c:80 packet: git< fetch=shallow wait-for-done filter
18:06:58.969101 pkt-line.c:80 packet: git< server-option
18:06:58.969107 pkt-line.c:80 packet: git< object-format=sha1
18:06:58.969113 pkt-line.c:80 packet: git< 0000
18:06:58.969599 pkt-line.c:80 packet: fetch< version 2
18:06:58.969780 pkt-line.c:80 packet: fetch< agent=git/github-g5278a24c63ab
18:06:58.969792 pkt-line.c:80 packet: fetch< ls-refs=unborn
18:06:58.969802 pkt-line.c:80 packet: fetch< fetch=shallow wait-for-done filter
18:06:58.969812 pkt-line.c:80 packet: fetch< server-option
18:06:58.969821 pkt-line.c:80 packet: fetch< object-format=sha1
18:06:58.969829 pkt-line.c:80 packet: fetch< 0000
18:06:58.972969 pkt-line.c:80 packet: fetch> command=fetch
18:06:58.973000 pkt-line.c:80 packet: fetch> agent=git/2.38.1
18:06:58.973011 pkt-line.c:80 packet: fetch> object-format=sha1
18:06:58.973017 pkt-line.c:80 packet: fetch> 0001
18:06:58.973025 pkt-line.c:80 packet: fetch> thin-pack
18:06:58.973031 pkt-line.c:80 packet: fetch> ofs-delta
18:06:58.973059 pkt-line.c:80 packet: fetch> shallow fa522c149148b7bd8e55074fa2792735d621784c
18:06:58.973370 pkt-line.c:80 packet: fetch> filter blob:none
18:06:58.973397 pkt-line.c:80 packet: fetch> want e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
18:06:58.973407 pkt-line.c:80 packet: fetch> done
18:06:58.973414 pkt-line.c:80 packet: fetch> 0000
18:06:58.973461 pkt-line.c:80 packet: git< command=fetch
18:06:58.973478 pkt-line.c:80 packet: git< agent=git/2.38.1
18:06:58.973487 pkt-line.c:80 packet: git< object-format=sha1
18:06:58.973495 pkt-line.c:80 packet: git< 0001
18:06:58.973504 pkt-line.c:80 packet: git< thin-pack
18:06:58.973513 pkt-line.c:80 packet: git< ofs-delta
18:06:58.973522 pkt-line.c:80 packet: git< shallow fa522c149148b7bd8e55074fa2792735d621784c
18:06:58.973531 pkt-line.c:80 packet: git< filter blob:none
18:06:58.973540 pkt-line.c:80 packet: git< want e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
18:06:58.973550 pkt-line.c:80 packet: git< done
18:06:58.973557 pkt-line.c:80 packet: git< 0000
18:06:58.973776 http.c:678 == Info: Couldn't find host github.com in the (nil) file; using defaults
18:06:58.973804 http.c:678 == Info: Found bundle for host github.com: 0x6000033c0390 [can multiplex]
18:06:58.973851 http.c:678 == Info: Re-using existing connection! (#0) with host github.com
18:06:58.973869 http.c:678 == Info: Connected to github.com (140.82.121.3) port 443 (#0)
18:06:58.973933 http.c:678 == Info: Using Stream ID: 3 (easy handle 0x133028e00)
18:06:58.974354 http.c:625 => Send header, 0000000307 bytes (0x00000133)
18:06:58.974369 http.c:637 => Send header: POST /gaborcsardi/playground/git-upload-pack HTTP/2
18:06:58.974374 http.c:637 => Send header: Host: github.com
18:06:58.974379 http.c:637 => Send header: user-agent: git/2.38.1
18:06:58.974383 http.c:637 => Send header: accept-encoding: deflate, gzip
18:06:58.974387 http.c:637 => Send header: content-type: application/x-git-upload-pack-request
18:06:58.974391 http.c:637 => Send header: accept: application/x-git-upload-pack-result
18:06:58.974396 http.c:637 => Send header: accept-language: en-US, *;q=0.9
18:06:58.974400 http.c:637 => Send header: git-protocol: version=2
18:06:58.974404 http.c:637 => Send header: content-length: 224
18:06:58.974408 http.c:637 => Send header:
18:06:58.974488 http.c:678 == Info: We are completely uploaded and fine
18:06:59.127354 http.c:625 <= Recv header, 0000000013 bytes (0x0000000d)
18:06:59.127396 http.c:637 <= Recv header: HTTP/2 200
18:06:59.127407 http.c:625 <= Recv header, 0000000026 bytes (0x0000001a)
18:06:59.127415 http.c:637 <= Recv header: server: GitHub Babel 2.0
18:06:59.127424 http.c:625 <= Recv header, 0000000052 bytes (0x00000034)
18:06:59.127432 http.c:637 <= Recv header: content-type: application/x-git-upload-pack-result
18:06:59.127441 http.c:625 <= Recv header, 0000000054 bytes (0x00000036)
18:06:59.127447 http.c:637 <= Recv header: content-security-policy: default-src 'none'; sandbox
18:06:59.127454 http.c:625 <= Recv header, 0000000040 bytes (0x00000028)
18:06:59.127461 http.c:637 <= Recv header: expires: Fri, 01 Jan 1980 00:00:00 GMT
18:06:59.127468 http.c:625 <= Recv header, 0000000018 bytes (0x00000012)
18:06:59.127474 http.c:637 <= Recv header: pragma: no-cache
18:06:59.127498 http.c:625 <= Recv header, 0000000053 bytes (0x00000035)
18:06:59.127505 http.c:637 <= Recv header: cache-control: no-cache, max-age=0, must-revalidate
18:06:59.127513 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:59.127519 http.c:637 <= Recv header: vary: Accept-Encoding
18:06:59.127526 http.c:625 <= Recv header, 0000000023 bytes (0x00000017)
18:06:59.127532 http.c:637 <= Recv header: x-frame-options: DENY
18:06:59.127539 http.c:625 <= Recv header, 0000000056 bytes (0x00000038)
18:06:59.127546 http.c:637 <= Recv header: x-github-request-id: CDEB:12B1F:471820:491195:6388DF32
18:06:59.127556 http.c:625 <= Recv header, 0000000002 bytes (0x00000002)
18:06:59.127564 http.c:637 <= Recv header:
18:06:59.132107 pkt-line.c:80 packet: fetch< shallow-info
18:06:59.132141 pkt-line.c:80 packet: fetch< 0001
18:06:59.132152 pkt-line.c:80 packet: fetch< packfile
18:06:59.138861 pkt-line.c:80 packet: sideband< \2Enumerating objects: 1, done.
18:06:59.138878 http.c:678 == Info: Connection #0 to host github.com left intact
18:06:59.138907 pkt-line.c:80 packet: git> 0002
remote: Enumerating objects: 1, done.
18:06:59.138922 pkt-line.c:80 packet: sideband< \2Counting objects: 100% (1/1)\15
18:06:59.138938 pkt-line.c:80 packet: sideband< \2Counting objects: 100% (1/1), done.
remote: Counting objects: 100% (1/1), done.
18:06:59.138952 pkt-line.c:80 packet: sideband< PACK ...
18:06:59.138968 pkt-line.c:80 packet: sideband< \2Total 1 (delta 0), reused 1 (delta 0), pack-reused 0
remote: Total 1 (delta 0), reused 1 (delta 0), pack-reused 0
18:06:59.138986 pkt-line.c:80 packet: sideband< 0000
18:06:59.139085 run-command.c:655 trace: run_command: git index-pack --stdin -v --fix-thin --promisor --pack_header=2,1
18:06:59.158088 git.c:460 trace: built-in: git index-pack --stdin -v --fix-thin --promisor --pack_header=2,1
Receiving objects: 100% (1/1), 41 bytes | 41.00 KiB/s, done.
18:06:59.167437 pkt-line.c:80 packet: fetch< 0002
18:06:59.167940 run-command.c:655 trace: run_command: git maintenance run --auto --no-quiet
18:06:59.179566 git.c:460 trace: built-in: git maintenance run --auto --no-quiet
Raw
sparse checkout protocol version 1
❯ GIT_CURL_VERBOSE=1 GIT_TRACE=2 GIT_TRACE_PACKET=true git clone -n -q --depth 1 https://git.bioconductor.org/packages/limma.git
00:06:01.471719 git.c:460 trace: built-in: git clone -n -q --depth 1 https://git.bioconductor.org/packages/limma.git
00:06:01.485216 run-command.c:655 trace: run_command: git remote-https origin https://git.bioconductor.org/packages/limma.git
00:06:01.490298 git.c:750 trace: exec: git-remote-https origin https://git.bioconductor.org/packages/limma.git
00:06:01.490759 run-command.c:655 trace: run_command: git-remote-https origin https://git.bioconductor.org/packages/limma.git
00:06:01.501248 http.c:701 == Info: Couldn't find host git.bioconductor.org in the (nil) file; using defaults
00:06:01.577269 http.c:701 == Info: Trying 34.192.48.227:443...
00:06:01.694174 http.c:701 == Info: Connected to git.bioconductor.org (34.192.48.227) port 443 (#0)
00:06:01.694301 http.c:701 == Info: ALPN: offers h2
00:06:01.694307 http.c:701 == Info: ALPN: offers http/1.1
00:06:01.701374 http.c:701 == Info: CAfile: /etc/ssl/cert.pem
00:06:01.701384 http.c:701 == Info: CApath: none
00:06:01.701646 http.c:701 == Info: (304) (OUT), TLS handshake, Client hello (1):
00:06:01.819968 http.c:701 == Info: (304) (IN), TLS handshake, Server hello (2):
00:06:01.820089 http.c:701 == Info: TLSv1.2 (IN), TLS handshake, Certificate (11):
00:06:01.822745 http.c:701 == Info: TLSv1.2 (IN), TLS handshake, Server key exchange (12):
00:06:01.823108 http.c:701 == Info: TLSv1.2 (IN), TLS handshake, Server finished (14):
00:06:01.827174 http.c:701 == Info: TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
00:06:01.827183 http.c:701 == Info: TLSv1.2 (OUT), TLS change cipher, Change cipher spec (1):
00:06:01.827217 http.c:701 == Info: TLSv1.2 (OUT), TLS handshake, Finished (20):
00:06:01.944411 http.c:701 == Info: TLSv1.2 (IN), TLS change cipher, Change cipher spec (1):
00:06:01.944490 http.c:701 == Info: TLSv1.2 (IN), TLS handshake, Finished (20):
00:06:01.944506 http.c:701 == Info: SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
00:06:01.944510 http.c:701 == Info: ALPN: server accepted http/1.1
00:06:01.944516 http.c:701 == Info: Server certificate:
00:06:01.944527 http.c:701 == Info: subject: CN=*.bioconductor.org
00:06:01.944532 http.c:701 == Info: start date: Aug 25 07:16:46 2022 GMT
00:06:01.944536 http.c:701 == Info: expire date: Sep 26 07:16:46 2023 GMT
00:06:01.944553 http.c:701 == Info: subjectAltName: host "git.bioconductor.org" matched cert's "*.bioconductor.org"
00:06:01.944569 http.c:701 == Info: issuer: C=US; ST=Arizona; L=Scottsdale; O=GoDaddy.com, Inc.; OU=http://certs.godaddy.com/repository/; CN=Go Daddy Secure Certificate Authority - G2
00:06:01.944573 http.c:701 == Info: SSL certificate verify ok.
00:06:01.944703 http.c:648 => Send header, 0000000243 bytes (0x000000f3)
00:06:01.944710 http.c:660 => Send header: GET /packages/limma.git/info/refs?service=git-upload-pack HTTP/1.1
00:06:01.944713 http.c:660 => Send header: Host: git.bioconductor.org
00:06:01.944715 http.c:660 => Send header: User-Agent: git/2.39.0
00:06:01.944718 http.c:660 => Send header: Accept: */*
00:06:01.944720 http.c:660 => Send header: Accept-Encoding: deflate, gzip
00:06:01.944723 http.c:660 => Send header: Accept-Language: en-US, *;q=0.9
00:06:01.944725 http.c:660 => Send header: Pragma: no-cache
00:06:01.944728 http.c:660 => Send header: Git-Protocol: version=2
00:06:01.944776 http.c:660 => Send header:
00:06:02.129552 http.c:701 == Info: Mark bundle as not supporting multiuse
00:06:02.129668 http.c:648 <= Recv header, 0000000017 bytes (0x00000011)
00:06:02.129706 http.c:660 <= Recv header: HTTP/1.1 200 OK
00:06:02.129717 http.c:648 <= Recv header, 0000000037 bytes (0x00000025)
00:06:02.129732 http.c:660 <= Recv header: Date: Tue, 25 Apr 2023 22:06:02 GMT
00:06:02.129742 http.c:648 <= Recv header, 0000000032 bytes (0x00000020)
00:06:02.129749 http.c:660 <= Recv header: Server: Apache/2.4.18 (Ubuntu)
00:06:02.129757 http.c:648 <= Recv header, 0000000040 bytes (0x00000028)
00:06:02.129764 http.c:660 <= Recv header: Expires: Fri, 01 Jan 1980 00:00:00 GMT
00:06:02.129771 http.c:648 <= Recv header, 0000000018 bytes (0x00000012)
00:06:02.129786 http.c:660 <= Recv header: Pragma: no-cache
00:06:02.129794 http.c:648 <= Recv header, 0000000053 bytes (0x00000035)
00:06:02.130117 http.c:660 <= Recv header: Cache-Control: no-cache, max-age=0, must-revalidate
00:06:02.130133 http.c:648 <= Recv header, 0000000028 bytes (0x0000001c)
00:06:02.130139 http.c:660 <= Recv header: Transfer-Encoding: chunked
00:06:02.130148 http.c:648 <= Recv header, 0000000059 bytes (0x0000003b)
00:06:02.130154 http.c:660 <= Recv header: Content-Type: application/x-git-upload-pack-advertisement
00:06:02.130173 http.c:648 <= Recv header, 0000000002 bytes (0x00000002)
00:06:02.130180 http.c:660 <= Recv header:
00:06:02.246118 http.c:701 == Info: Connection #0 to host git.bioconductor.org left intact
00:06:02.247916 pkt-line.c:80 packet: git< # service=git-upload-pack
00:06:02.247921 pkt-line.c:80 packet: git< 0000
00:06:02.247928 pkt-line.c:80 packet: git< 89d376b060ee8d400d9795a47971ad5aed42fbd8 HEAD\0multi_ack thin-pack side-band side-band-64k ofs-delta shallow deepen-since deepen-not deepen-relative no-progress include-tag multi_ack_detailed no-done symref=HEAD:refs/heads/devel object-format=sha1 agent=git/2.33.0
00:06:02.248126 pkt-line.c:80 packet: git< 19c6bde194e17c870f3d891d21fd911ef1ad160e refs/heads/RELEASE_1_4
00:06:02.248135 pkt-line.c:80 packet: git< d3f7a057e689346d9ceed3efad7c90cf6b624ac8 refs/heads/RELEASE_1_4_branch
00:06:02.248139 pkt-line.c:80 packet: git< 35d60a95d51c0e4d0ff93f2b89a6595bc287b38e refs/heads/RELEASE_1_5
00:06:02.248141 pkt-line.c:80 packet: git< 035dcd3e7359cbc66943168d6f901191fc6e0372 refs/heads/RELEASE_1_6
00:06:02.248142 pkt-line.c:80 packet: git< 6db906149aa010b7d9367c980d3453bd2d064380 refs/heads/RELEASE_1_7
00:06:02.248143 pkt-line.c:80 packet: git< 0137b8bce99c75d5870b2d1e98c2219e271a5e3a refs/heads/RELEASE_1_8
00:06:02.248145 pkt-line.c:80 packet: git< 862f4560f81610b2f018bc499fc84be18f175a4d refs/heads/RELEASE_1_9
00:06:02.248146 pkt-line.c:80 packet: git< 83b649d3ae9ebbc20679f3895550ffea0edbebae refs/heads/RELEASE_2_0
00:06:02.248147 pkt-line.c:80 packet: git< fdb605667972487806966f51fdf47ba22a3e1f1d refs/heads/RELEASE_2_1
00:06:02.248212 pkt-line.c:80 packet: git< 7f9045e47132e403eaed4986fb6f140290020e2a refs/heads/RELEASE_2_10
00:06:02.248217 pkt-line.c:80 packet: git< 8e229978655951a8c292c3f764456e002f37902a refs/heads/RELEASE_2_11
00:06:02.248219 pkt-line.c:80 packet: git< 773e7e8065957ade9aca3b3181223ed7ce9b98f6 refs/heads/RELEASE_2_12
00:06:02.248220 pkt-line.c:80 packet: git< 3d376df0f9c7333f09eb82bd170e995dd6ddaf84 refs/heads/RELEASE_2_13
00:06:02.248221 pkt-line.c:80 packet: git< 377747e4e1e48cc6e6f42e80f004c9221ab61174 refs/heads/RELEASE_2_14
00:06:02.248223 pkt-line.c:80 packet: git< a0b40fe0e58133c852a7f697eb9a0e69bef2907d refs/heads/RELEASE_2_2
00:06:02.248225 pkt-line.c:80 packet: git< 942f861c51bb1033a49cc4b0dd6dbeb9bfeba2fd refs/heads/RELEASE_2_3
00:06:02.248226 pkt-line.c:80 packet: git< 3e015fc03f880cfdf33649a8e7cc5fb201210343 refs/heads/RELEASE_2_4
00:06:02.248327 pkt-line.c:80 packet: git< 5fef132a4d949a849f282ce1276b70a65d546024 refs/heads/RELEASE_2_5
00:06:02.248329 pkt-line.c:80 packet: git< 1e6fd9e44523372648123befb7440c97e75e918a refs/heads/RELEASE_2_6
00:06:02.248330 pkt-line.c:80 packet: git< 80379c4e36c4d0db97f9b3002f0fcbb0258d2af3 refs/heads/RELEASE_2_7
00:06:02.248332 pkt-line.c:80 packet: git< 9c44bfc70d983b7d2d47bbff380aee228a6ae220 refs/heads/RELEASE_2_8
00:06:02.248333 pkt-line.c:80 packet: git< 12140f5c909ff6afc827b6fbc92c09d8ffc7ac5d refs/heads/RELEASE_2_9
00:06:02.248334 pkt-line.c:80 packet: git< fe139b2a862f93708f1543bb271c23cb67252746 refs/heads/RELEASE_3_0
00:06:02.248336 pkt-line.c:80 packet: git< 160df062e91e3329b122ca8ad15e2e94ec15cdb4 refs/heads/RELEASE_3_1
00:06:02.248337 pkt-line.c:80 packet: git< 4b763eebed25160dc91c51ee8152460fcf8ad6a5 refs/heads/RELEASE_3_10
00:06:02.248470 pkt-line.c:80 packet: git< 90275de18e18fd1f3a6bb140ef3922bd638429b5 refs/heads/RELEASE_3_11
00:06:02.248472 pkt-line.c:80 packet: git< ff03542231827f39ebde6464cdbba0110e24364e refs/heads/RELEASE_3_12
00:06:02.248474 pkt-line.c:80 packet: git< 80282e9a29ecaf1cd16f43638d9e9116478c829f refs/heads/RELEASE_3_13
00:06:02.248475 pkt-line.c:80 packet: git< 724632de74c00bfbb9f140bcacf69a741db14a93 refs/heads/RELEASE_3_14
00:06:02.248477 pkt-line.c:80 packet: git< 3226c29ad8c18aa7e6722f4a2c95ff8ac900437e refs/heads/RELEASE_3_15
00:06:02.248478 pkt-line.c:80 packet: git< 6641c256c83f36822e207cca94f64075a49704e3 refs/heads/RELEASE_3_16
00:06:02.248479 pkt-line.c:80 packet: git< efe857829233edb11ae317ce5d1ad4ea3073cf7f refs/heads/RELEASE_3_17
00:06:02.248481 pkt-line.c:80 packet: git< 959a002eb159e879f58b0574261aef908e75e340 refs/heads/RELEASE_3_2
00:06:02.248541 pkt-line.c:80 packet: git< 9d531b05d50f3a01945e16ad7843b6a6f7d3a82d refs/heads/RELEASE_3_3
00:06:02.248543 pkt-line.c:80 packet: git< c9e464b9a2fd95a237ab95c4ae5d652aba506867 refs/heads/RELEASE_3_4
00:06:02.248544 pkt-line.c:80 packet: git< 593edf28e21fe054d64137ae271b8a52ab05bc60 refs/heads/RELEASE_3_5
00:06:02.248545 pkt-line.c:80 packet: git< 6755278a929f942a49e2441fb002a3ed393e1139 refs/heads/RELEASE_3_6
00:06:02.248547 pkt-line.c:80 packet: git< 3148d1cb7eea9c6bdd60351d51abcfd665332d44 refs/heads/RELEASE_3_7
00:06:02.248548 pkt-line.c:80 packet: git< 77b292eb150cdedaa1db704bcfb01f0bb29e9849 refs/heads/RELEASE_3_8
00:06:02.248549 pkt-line.c:80 packet: git< 3ae0767ecf7a764030e7b7d0b1d0f292c0b24055 refs/heads/RELEASE_3_9
00:06:02.248551 pkt-line.c:80 packet: git< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.248704 pkt-line.c:80 packet: git< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/master
00:06:02.248707 pkt-line.c:80 packet: git< 0000
00:06:02.250808 pkt-line.c:80 packet: git> 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.250812 pkt-line.c:80 packet: git> 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.250814 pkt-line.c:80 packet: git> 0000
00:06:02.250829 run-command.c:655 trace: run_command: git fetch-pack --stateless-rpc --stdin --lock-pack --include-tag --thin --cloning --no-progress --depth=1 https://git.bioconductor.org/packages/limma.git/
00:06:02.261506 git.c:460 trace: built-in: git fetch-pack --stateless-rpc --stdin --lock-pack --include-tag --thin --cloning --no-progress --depth=1 https://git.bioconductor.org/packages/limma.git/
00:06:02.262443 pkt-line.c:80 packet: fetch-pack< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.262451 pkt-line.c:80 packet: fetch-pack< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.262454 pkt-line.c:80 packet: fetch-pack< 0000
00:06:02.262458 pkt-line.c:80 packet: fetch-pack< 89d376b060ee8d400d9795a47971ad5aed42fbd8 HEAD\0multi_ack thin-pack side-band side-band-64k ofs-delta shallow deepen-since deepen-not deepen-relative no-progress include-tag multi_ack_detailed no-done symref=HEAD:refs/heads/devel object-format=sha1 agent=git/2.33.0
00:06:02.262467 pkt-line.c:80 packet: fetch-pack< 19c6bde194e17c870f3d891d21fd911ef1ad160e refs/heads/RELEASE_1_4
00:06:02.262470 pkt-line.c:80 packet: fetch-pack< d3f7a057e689346d9ceed3efad7c90cf6b624ac8 refs/heads/RELEASE_1_4_branch
00:06:02.262474 pkt-line.c:80 packet: fetch-pack< 35d60a95d51c0e4d0ff93f2b89a6595bc287b38e refs/heads/RELEASE_1_5
00:06:02.262498 pkt-line.c:80 packet: fetch-pack< 035dcd3e7359cbc66943168d6f901191fc6e0372 refs/heads/RELEASE_1_6
00:06:02.262501 pkt-line.c:80 packet: fetch-pack< 6db906149aa010b7d9367c980d3453bd2d064380 refs/heads/RELEASE_1_7
00:06:02.262504 pkt-line.c:80 packet: fetch-pack< 0137b8bce99c75d5870b2d1e98c2219e271a5e3a refs/heads/RELEASE_1_8
00:06:02.262506 pkt-line.c:80 packet: fetch-pack< 862f4560f81610b2f018bc499fc84be18f175a4d refs/heads/RELEASE_1_9
00:06:02.262508 pkt-line.c:80 packet: fetch-pack< 83b649d3ae9ebbc20679f3895550ffea0edbebae refs/heads/RELEASE_2_0
00:06:02.262510 pkt-line.c:80 packet: fetch-pack< fdb605667972487806966f51fdf47ba22a3e1f1d refs/heads/RELEASE_2_1
00:06:02.262512 pkt-line.c:80 packet: fetch-pack< 7f9045e47132e403eaed4986fb6f140290020e2a refs/heads/RELEASE_2_10
00:06:02.262515 pkt-line.c:80 packet: fetch-pack< 8e229978655951a8c292c3f764456e002f37902a refs/heads/RELEASE_2_11
00:06:02.262517 pkt-line.c:80 packet: fetch-pack< 773e7e8065957ade9aca3b3181223ed7ce9b98f6 refs/heads/RELEASE_2_12
00:06:02.262579 pkt-line.c:80 packet: fetch-pack< 3d376df0f9c7333f09eb82bd170e995dd6ddaf84 refs/heads/RELEASE_2_13
00:06:02.262582 pkt-line.c:80 packet: fetch-pack< 377747e4e1e48cc6e6f42e80f004c9221ab61174 refs/heads/RELEASE_2_14
00:06:02.262584 pkt-line.c:80 packet: fetch-pack< a0b40fe0e58133c852a7f697eb9a0e69bef2907d refs/heads/RELEASE_2_2
00:06:02.262586 pkt-line.c:80 packet: fetch-pack< 942f861c51bb1033a49cc4b0dd6dbeb9bfeba2fd refs/heads/RELEASE_2_3
00:06:02.262588 pkt-line.c:80 packet: fetch-pack< 3e015fc03f880cfdf33649a8e7cc5fb201210343 refs/heads/RELEASE_2_4
00:06:02.262590 pkt-line.c:80 packet: fetch-pack< 5fef132a4d949a849f282ce1276b70a65d546024 refs/heads/RELEASE_2_5
00:06:02.262592 pkt-line.c:80 packet: fetch-pack< 1e6fd9e44523372648123befb7440c97e75e918a refs/heads/RELEASE_2_6
00:06:02.262595 pkt-line.c:80 packet: fetch-pack< 80379c4e36c4d0db97f9b3002f0fcbb0258d2af3 refs/heads/RELEASE_2_7
00:06:02.262665 pkt-line.c:80 packet: fetch-pack< 9c44bfc70d983b7d2d47bbff380aee228a6ae220 refs/heads/RELEASE_2_8
00:06:02.262668 pkt-line.c:80 packet: fetch-pack< 12140f5c909ff6afc827b6fbc92c09d8ffc7ac5d refs/heads/RELEASE_2_9
00:06:02.262670 pkt-line.c:80 packet: fetch-pack< fe139b2a862f93708f1543bb271c23cb67252746 refs/heads/RELEASE_3_0
00:06:02.262672 pkt-line.c:80 packet: fetch-pack< 160df062e91e3329b122ca8ad15e2e94ec15cdb4 refs/heads/RELEASE_3_1
00:06:02.262674 pkt-line.c:80 packet: fetch-pack< 4b763eebed25160dc91c51ee8152460fcf8ad6a5 refs/heads/RELEASE_3_10
00:06:02.262676 pkt-line.c:80 packet: fetch-pack< 90275de18e18fd1f3a6bb140ef3922bd638429b5 refs/heads/RELEASE_3_11
00:06:02.262678 pkt-line.c:80 packet: fetch-pack< ff03542231827f39ebde6464cdbba0110e24364e refs/heads/RELEASE_3_12
00:06:02.262681 pkt-line.c:80 packet: fetch-pack< 80282e9a29ecaf1cd16f43638d9e9116478c829f refs/heads/RELEASE_3_13
00:06:02.262772 pkt-line.c:80 packet: fetch-pack< 724632de74c00bfbb9f140bcacf69a741db14a93 refs/heads/RELEASE_3_14
00:06:02.262774 pkt-line.c:80 packet: fetch-pack< 3226c29ad8c18aa7e6722f4a2c95ff8ac900437e refs/heads/RELEASE_3_15
00:06:02.262776 pkt-line.c:80 packet: fetch-pack< 6641c256c83f36822e207cca94f64075a49704e3 refs/heads/RELEASE_3_16
00:06:02.262778 pkt-line.c:80 packet: fetch-pack< efe857829233edb11ae317ce5d1ad4ea3073cf7f refs/heads/RELEASE_3_17
00:06:02.262780 pkt-line.c:80 packet: fetch-pack< 959a002eb159e879f58b0574261aef908e75e340 refs/heads/RELEASE_3_2
00:06:02.262783 pkt-line.c:80 packet: fetch-pack< 9d531b05d50f3a01945e16ad7843b6a6f7d3a82d refs/heads/RELEASE_3_3
00:06:02.262785 pkt-line.c:80 packet: fetch-pack< c9e464b9a2fd95a237ab95c4ae5d652aba506867 refs/heads/RELEASE_3_4
00:06:02.262787 pkt-line.c:80 packet: fetch-pack< 593edf28e21fe054d64137ae271b8a52ab05bc60 refs/heads/RELEASE_3_5
00:06:02.271020 pkt-line.c:80 packet: fetch-pack< 6755278a929f942a49e2441fb002a3ed393e1139 refs/heads/RELEASE_3_6
00:06:02.271028 pkt-line.c:80 packet: fetch-pack< 3148d1cb7eea9c6bdd60351d51abcfd665332d44 refs/heads/RELEASE_3_7
00:06:02.271031 pkt-line.c:80 packet: fetch-pack< 77b292eb150cdedaa1db704bcfb01f0bb29e9849 refs/heads/RELEASE_3_8
00:06:02.271033 pkt-line.c:80 packet: fetch-pack< 3ae0767ecf7a764030e7b7d0b1d0f292c0b24055 refs/heads/RELEASE_3_9
00:06:02.271035 pkt-line.c:80 packet: fetch-pack< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/devel
00:06:02.271037 pkt-line.c:80 packet: fetch-pack< 89d376b060ee8d400d9795a47971ad5aed42fbd8 refs/heads/master
00:06:02.271039 pkt-line.c:80 packet: fetch-pack< 0000
00:06:02.272700 pkt-line.c:80 packet: fetch-pack> want 89d376b060ee8d400d9795a47971ad5aed42fbd8 multi_ack_detailed no-done side-band-64k thin-pack no-progress include-tag ofs-delta deepen-since deepen-not agent=git/2.39.0
00:06:02.272713 pkt-line.c:80 packet: fetch-pack> deepen 1
00:06:02.272715 pkt-line.c:80 packet: fetch-pack> 0000
00:06:02.272765 pkt-line.c:80 packet: fetch-pack> 0000
00:06:02.272786 pkt-line.c:80 packet: git< 00b0want 89d376b060ee8d400d9795a47971ad5aed42fbd8 multi_ack_detailed no-done side-band-64k thin-pack no-progress include-tag ofs-delta deepen-since deepen-not agent=git/2.39.0000cdeepen 10000
00:06:02.272814 pkt-line.c:80 packet: git< 0000
00:06:02.272901 http.c:701 == Info: Couldn't find host git.bioconductor.org in the (nil) file; using defaults
00:06:02.272907 http.c:701 == Info: Found bundle for host: 0x600003df81e0 [serially]
00:06:02.272909 http.c:701 == Info: Can not multiplex, even if we wanted to
00:06:02.272925 http.c:701 == Info: Re-using existing connection #0 with host git.bioconductor.org
00:06:02.272927 http.c:701 == Info: Connected to git.bioconductor.org (34.192.48.227) port 443 (#0)
00:06:02.273021 http.c:648 => Send header, 0000000290 bytes (0x00000122)
00:06:02.273029 http.c:660 => Send header: POST /packages/limma.git/git-upload-pack HTTP/1.1
00:06:02.273030 http.c:660 => Send header: Host: git.bioconductor.org
00:06:02.273032 http.c:660 => Send header: User-Agent: git/2.39.0
00:06:02.273033 http.c:660 => Send header: Accept-Encoding: deflate, gzip
00:06:02.273034 http.c:660 => Send header: Content-Type: application/x-git-upload-pack-request
00:06:02.273035 http.c:660 => Send header: Accept: application/x-git-upload-pack-result
00:06:02.273037 http.c:660 => Send header: Accept-Language: en-US, *;q=0.9
00:06:02.273038 http.c:660 => Send header: Content-Length: 192
00:06:02.273039 http.c:660 => Send header:
00:06:02.458623 http.c:701 == Info: Mark bundle as not supporting multiuse
00:06:02.458675 http.c:648 <= Recv header, 0000000017 bytes (0x00000011)
00:06:02.458682 http.c:660 <= Recv header: HTTP/1.1 200 OK
00:06:02.458687 http.c:648 <= Recv header, 0000000037 bytes (0x00000025)
00:06:02.458689 http.c:660 <= Recv header: Date: Tue, 25 Apr 2023 22:06:02 GMT
00:06:02.458693 http.c:648 <= Recv header, 0000000032 bytes (0x00000020)
00:06:02.458695 http.c:660 <= Recv header: Server: Apache/2.4.18 (Ubuntu)
00:06:02.458698 http.c:648 <= Recv header, 0000000040 bytes (0x00000028)
00:06:02.458701 http.c:660 <= Recv header: Expires: Fri, 01 Jan 1980 00:00:00 GMT
00:06:02.458703 http.c:648 <= Recv header, 0000000018 bytes (0x00000012)
00:06:02.458705 http.c:660 <= Recv header: Pragma: no-cache
00:06:02.458708 http.c:648 <= Recv header, 0000000053 bytes (0x00000035)
00:06:02.458868 http.c:660 <= Recv header: Cache-Control: no-cache, max-age=0, must-revalidate
00:06:02.458874 http.c:648 <= Recv header, 0000000028 bytes (0x0000001c)
00:06:02.458876 http.c:660 <= Recv header: Transfer-Encoding: chunked
00:06:02.458880 http.c:648 <= Recv header, 0000000052 bytes (0x00000034)
00:06:02.458882 http.c:660 <= Recv header: Content-Type: application/x-git-upload-pack-result
00:06:02.458886 http.c:648 <= Recv header, 0000000002 bytes (0x00000002)
00:06:02.458888 http.c:660 <= Recv header:
00:06:02.458966 pkt-line.c:80 packet: fetch-pack< shallow 89d376b060ee8d400d9795a47971ad5aed42fbd8
00:06:02.459051 pkt-line.c:80 packet: fetch-pack< 0000
00:06:02.459058 pkt-line.c:80 packet: fetch-pack> done
00:06:02.459065 pkt-line.c:80 packet: fetch-pack> 0000
00:06:02.460117 http.c:701 == Info: Connection #0 to host git.bioconductor.org left intact
00:06:02.460147 pkt-line.c:80 packet: git< 00b0want 89d376b060ee8d400d9795a47971ad5aed42fbd8 multi_ack_detailed no-done side-band-64k thin-pack no-progress include-tag ofs-delta deepen-since deepen-not agent=git/2.39.0000cdeepen 100000009done
00:06:02.460152 pkt-line.c:80 packet: git< 0000
00:06:02.460317 http.c:701 == Info: Couldn't find host git.bioconductor.org in the (nil) file; using defaults
00:06:02.460327 http.c:701 == Info: Found bundle for host: 0x600003df81e0 [serially]
00:06:02.460330 http.c:701 == Info: Can not multiplex, even if we wanted to
00:06:02.460349 http.c:701 == Info: Re-using existing connection #0 with host git.bioconductor.org
00:06:02.460355 http.c:701 == Info: Connected to git.bioconductor.org (34.192.48.227) port 443 (#0)
00:06:02.460495 http.c:648 => Send header, 0000000290 bytes (0x00000122)
00:06:02.460503 http.c:660 => Send header: POST /packages/limma.git/git-upload-pack HTTP/1.1
00:06:02.460505 http.c:660 => Send header: Host: git.bioconductor.org
00:06:02.460507 http.c:660 => Send header: User-Agent: git/2.39.0
00:06:02.460509 http.c:660 => Send header: Accept-Encoding: deflate, gzip
00:06:02.460511 http.c:660 => Send header: Content-Type: application/x-git-upload-pack-request
00:06:02.460514 http.c:660 => Send header: Accept: application/x-git-upload-pack-result
00:06:02.460516 http.c:660 => Send header: Accept-Language: en-US, *;q=0.9
00:06:02.460518 http.c:660 => Send header: Content-Length: 201
00:06:02.460520 http.c:660 => Send header:
00:06:02.648449 http.c:701 == Info: Mark bundle as not supporting multiuse
00:06:02.648576 http.c:648 <= Recv header, 0000000017 bytes (0x00000011)
00:06:02.648605 http.c:660 <= Recv header: HTTP/1.1 200 OK
00:06:02.648616 http.c:648 <= Recv header, 0000000037 bytes (0x00000025)
00:06:02.648625 http.c:660 <= Recv header: Date: Tue, 25 Apr 2023 22:06:02 GMT
00:06:02.648638 http.c:648 <= Recv header, 0000000032 bytes (0x00000020)
00:06:02.648645 http.c:660 <= Recv header: Server: Apache/2.4.18 (Ubuntu)
00:06:02.648653 http.c:648 <= Recv header, 0000000040 bytes (0x00000028)
00:06:02.648660 http.c:660 <= Recv header: Expires: Fri, 01 Jan 1980 00:00:00 GMT
00:06:02.648671 http.c:648 <= Recv header, 0000000018 bytes (0x00000012)
00:06:02.648677 http.c:660 <= Recv header: Pragma: no-cache
00:06:02.648685 http.c:648 <= Recv header, 0000000053 bytes (0x00000035)
00:06:02.649369 http.c:660 <= Recv header: Cache-Control: no-cache, max-age=0, must-revalidate
00:06:02.649409 http.c:648 <= Recv header, 0000000028 bytes (0x0000001c)
00:06:02.649426 http.c:660 <= Recv header: Transfer-Encoding: chunked
00:06:02.649442 http.c:648 <= Recv header, 0000000052 bytes (0x00000034)
00:06:02.649458 http.c:660 <= Recv header: Content-Type: application/x-git-upload-pack-result
00:06:02.649471 http.c:648 <= Recv header, 0000000002 bytes (0x00000002)
00:06:02.649478 http.c:660 <= Recv header:
00:06:02.650953 pkt-line.c:80 packet: fetch-pack< shallow 89d376b060ee8d400d9795a47971ad5aed42fbd8
00:06:02.651043 pkt-line.c:80 packet: fetch-pack< 0000
00:06:02.651056 pkt-line.c:80 packet: fetch-pack< NAK
00:06:02.651066 pkt-line.c:80 packet: fetch-pack> 0000
00:06:02.705547 pkt-line.c:80 packet: sideband< PACK ...
00:06:02.705634 run-command.c:655 trace: run_command: git --shallow-file /private/tmp/limma/.git/shallow.lock index-pack --stdin --fix-thin '--keep=fetch-pack 46781 on Gabors-MacBook-Pro-3.local' --pack_header=2,297
00:06:02.721413 git.c:460 trace: built-in: git index-pack --stdin --fix-thin '--keep=fetch-pack 46781 on Gabors-MacBook-Pro-3.local' --pack_header=2,297
00:06:03.410113 http.c:701 == Info: Connection #0 to host git.bioconductor.org left intact
00:06:03.410219 pkt-line.c:80 packet: git< 0000
00:06:03.410085 pkt-line.c:80 packet: sideband< 0000
00:06:03.419968 run-command.c:655 trace: run_command: git rev-list --objects --stdin --not --all --quiet --alternate-refs
00:06:03.433289 git.c:460 trace: built-in: git rev-list --objects --stdin --not --all --quiet --alternate-refs
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