hsiao yi hsiaoyi0504

| | NDCG| |------------------------------| | Baseline (BM25) | 0.674 | | BM25 with customized parameters| 0.691| | Stemming methods| | Krovetz stemmer with default BM25 parameters | 0.653 | |No stemming with default BM25 parameters| 0.664| |Query Expansion| |RM3 query expansion with default BM25 parameters|0.684| |RM3 query expansion with customized BM25 parameters|0.695|

Install Samtools, BCFTools and htslib on linux

Install some build dependencies

sudo apt-get install autoconf automake make gcc perl zlib1g-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev libncurses5-dev

[samtools]

Basic:
- 為自己學git
  - Supplementary
    - Understanding git for real by exploring the .git directory
    - Git 內部原理 - 維護及資料復原(garbage collection)
Advanced
- git hook
- git reflog
ORIG_HEAD

How do I force “git pull” to overwrite local files ? StackOverFlow
How to remove data from git history? Github Help
Rename master branch for both local and remote Git repositories StackOverFlow
How do I delete a Git branch both locally and remotely? StackOverFlow

	# Need to execute "Set-ExecutionPolicy RemoteSigned -Scope CurrentUser" before executing this script
	# Set directory for installation - Chocolatey does not lock
	# down the directory if not the default
	$InstallDir='C:\Users\Yi.Hsiao\Documents\chocoportable'
	$env:ChocolateyInstall="$InstallDir"

	# If your PowerShell Execution policy is restrictive, you may
	# not be able to get around that. Try setting your session to
	# Bypass.
	Set-ExecutionPolicy Bypass

	USER_ID: 1984, GROUP_ID: 100
	nss_wrapper location: /usr/lib/libnss_wrapper.so
	AMBERHOME = /headless/amber17
	/headless/amber17/lib/python3.6/site-packages/

	------------------ update chromium-browser.init ------------------

	... set window size 1024 x 768 as chrome window size!

	#!/bin/bash
	cd ~
	perl -MNet::FTP -e \
	'$ftp = new Net::FTP("ftp.ncbi.nlm.nih.gov", Passive => 1);
	$ftp->login; $ftp->binary;
	$ftp->get("/entrez/entrezdirect/edirect.tar.gz");'
	gunzip -c edirect.tar.gz \| tar xf -
	rm edirect.tar.gz
	builtin exit
	export PATH=$PATH:$HOME/edirect >& /dev/null \|\| setenv PATH "${PATH}:$HOME/edirect"

	from __future__ import print_function
	from bs4 import BeautifulSoup
	from requests import get
	from os import mkdir, remove
	from os.path import exists
	import re
	from six.moves import urllib
	from subprocess import run, PIPE