Created
May 14, 2021 06:26
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Output: | |
``` | |
run at 2021-05-13 20:37:49.539609 | |
run at 2021-05-13 20:37:51.455154 | |
run at 2021-05-13 20:37:53.464305 | |
run at 2021-05-13 20:37:55.362489 | |
run at 2021-05-13 20:37:57.314623 | |
wait at 2021-05-13 20:37:57.565849 | |
wait at 2021-05-13 20:37:58.586121 | |
run at 2021-05-13 20:37:59.264404 | |
wait at 2021-05-13 20:37:59.744916 | |
wait at 2021-05-13 20:38:00.824887 | |
run at 2021-05-13 20:38:01.087396 | |
wait at 2021-05-13 20:38:01.880050 | |
run at 2021-05-13 20:38:03.019408 | |
run at 2021-05-13 20:38:04.931505 | |
run at 2021-05-13 20:38:06.848144 | |
run at 2021-05-13 20:38:08.652434 | |
run at 2021-05-13 20:38:10.517564 | |
run at 2021-05-13 20:38:12.420716 | |
wait at 2021-05-13 20:38:12.913098 | |
wait at 2021-05-13 20:38:13.949236 | |
run at 2021-05-13 20:38:14.265843 | |
wait at 2021-05-13 20:38:15.047552 | |
run at 2021-05-13 20:38:16.016130 | |
wait at 2021-05-13 20:38:16.071592 | |
wait at 2021-05-13 20:38:17.102090 | |
run at 2021-05-13 20:38:17.916955 | |
wait at 2021-05-13 20:38:18.111989 | |
wait at 2021-05-13 20:38:19.128092 | |
run at 2021-05-13 20:38:19.798337 | |
wait at 2021-05-13 20:38:20.151679 | |
wait at 2021-05-13 20:38:21.175237 | |
run at 2021-05-13 20:38:21.638235 | |
wait at 2021-05-13 20:38:22.191422 | |
wait at 2021-05-13 20:38:23.280004 | |
run at 2021-05-13 20:38:23.455187 | |
wait at 2021-05-13 20:38:24.384636 | |
run at 2021-05-13 20:38:25.317312 | |
run at 2021-05-13 20:38:27.195356 | |
run at 2021-05-13 20:38:29.005892 | |
run at 2021-05-13 20:38:30.793287 | |
run at 2021-05-13 20:38:32.731028 | |
run at 2021-05-13 20:38:34.587891 | |
wait at 2021-05-13 20:38:35.415058 | |
run at 2021-05-13 20:38:36.408298 | |
wait at 2021-05-13 20:38:36.478600 | |
wait at 2021-05-13 20:38:37.506526 | |
run at 2021-05-13 20:38:38.201874 | |
wait at 2021-05-13 20:38:38.540698 | |
wait at 2021-05-13 20:38:39.556040 | |
run at 2021-05-13 20:38:39.972694 | |
wait at 2021-05-13 20:38:40.577084 | |
wait at 2021-05-13 20:38:41.644943 | |
run at 2021-05-13 20:38:41.809560 | |
wait at 2021-05-13 20:38:42.667255 | |
run at 2021-05-13 20:38:43.665409 | |
wait at 2021-05-13 20:38:43.692654 | |
``` | |
Error: | |
``` | |
Exception in thread Thread-1: | |
Traceback (most recent call last): | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 954, in _bootstrap_inner | |
self.run() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 892, in run | |
self._target(*self._args, **self._kwargs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 926, in _wait_for_jobs | |
status = self._retry_request(request) | |
Traceback (most recent call last): | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/__init__.py", line 695, in snakemake | |
success = workflow.execute( | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/workflow.py", line 1017, in execute | |
success = scheduler.schedule() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 489, in schedule | |
self.run(runjobs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 500, in run | |
executor.run_jobs( | |
raise ex | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/__init__.py", line 136, in run_jobs | |
self.run( | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 806, in run | |
result = self._retry_request(operation) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request | |
raise ex | |
return request.execute() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request | |
return request.execute() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper | |
return wrapped(*args, **kwargs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute | |
resp, content = _retry_request( | |
return wrapped(*args, **kwargs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request | |
raise exception | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request | |
resp, content = http.request(uri, method, *args, **kwargs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request | |
resp, content = request(orig_request_method, uri, method, body, | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request | |
return http_callable(uri, method=method, body=body, headers=headers, | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request | |
(response, content) = self._request( | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request | |
(response, content) = self._conn_request(conn, request_uri, method, body, headers) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request | |
response = conn.getresponse() | |
resp, content = _retry_request( | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 1345, in getresponse | |
response.begin() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 307, in begin | |
version, status, reason = self._read_status() | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 268, in _read_status | |
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1") | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/socket.py", line 704, in readinto | |
return self._sock.recv_into(b) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1241, in recv_into | |
return self.read(nbytes, buffer) | |
raise exception | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1099, in read | |
return self._sslobj.read(len, buffer) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request | |
ssl.SSLError: [SSL: WRONG_VERSION_NUMBER] wrong version number (_ssl.c:2627) | |
resp, content = http.request(uri, method, *args, **kwargs) | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request | |
resp, content = request(orig_request_method, uri, method, body, | |
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request | |
``` |
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